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BaseSpace™ Sequence Hub

Cloud-based data management and simplified bioinformatics for labs that are getting started and rapidly scaling next-generation sequencing.

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Developer Resources
Application Support - Infectious Disease & Microbiology
News and Updates
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VCAT v4.0 - Support for DRAGEN and GA4GH best practices for small variant benchmarking
  • BaseSpace™ Sequence Hub
  • DRAGEN
  • News
  • 11/26/2019

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MiXCR Immune Repertoire Analyzer version 2.1.11 from MiLaboratories is now available at Illumina BaseSpace™
  • BaseSpace™ Sequence Hub
  • News
  • 11/21/2019

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BaseSpace Sequence Hub logo 2
BaseSpace™ CLI v1.0.0 is here!
  • BaseSpace™ Sequence Hub
  • Product updates
  • 10/08/2019

In our latest release, we have launched the officially supported BaseSpace (BS) Sequence Hub (BSSH) CLI v1.0.0, and all the exciting features that com...

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How-To Videos
How to Requeue a Run How to Requeue a Run
Command Line Interface - Getting Started Command Line Interface - Getting Started
Command Line Interface - Uploading Runs Command Line Interface - Uploading Runs
Command Line Interface - Uploading and downloading FASTQ files Command Line Interface - Uploading and downloading FASTQ files