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BaseSpace™ Sequence Hub

Cloud-based data management and simplified bioinformatics for labs that are getting started and rapidly scaling next-generation sequencing.

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Developer Resources
Application Support - Infectious Disease & Microbiology
News and Updates
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Spatial Proteogenomics NanoString GeoMx® Digital Spatial Profiler datasets now available on Illumina® BaseSpace™ Sequence Hub
  • BaseSpace™ Sequence Hub
  • Publications
  • News
  • 08/31/2023

NanoString and Illumina have collaborated to release two new demo datasets of GeoMx Digital Spatial Profiler (DSP) data on the Illumina BaseSpace Sequ...

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10x Genomics Chromium Single Cell Multiome ATAC + Gene Expression data on NovaSeq™ X series now available on BaseSpace™ Sequence Hub
  • BaseSpace™ Sequence Hub
  • Publications
  • News
  • 08/07/2023

Today, we’re thrilled to share NovaSeq X series data for single cell analysis in collaboration with 10x Genomics, a partner that develops multiple sin...

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10x Genomics’ Visium FFPE with CytAssist data now available on Illumina® BaseSpace™ Sequence Hub
  • BaseSpace™ Sequence Hub
  • Publications
  • News
  • 06/20/2023

Today, we’re sharing new sequencing run data publicly available on BaseSpace™ Sequence Hub (BSSH) for 10x Genomics Visium FFPE libraries with CytAssis...

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How-To Videos
How to Requeue a Run How to Requeue a Run
Command Line Interface - Getting Started Command Line Interface - Getting Started
Command Line Interface - Uploading Runs Command Line Interface - Uploading Runs
Command Line Interface - Uploading and downloading FASTQ files Command Line Interface - Uploading and downloading FASTQ files