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BaseSpace™ Sequence Hub

Cloud-based data management and simplified bioinformatics for labs that are getting started and rapidly scaling next-generation sequencing.

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Developer Resources
Application Support - Infectious Disease & Microbiology
News and Updates
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10x Genomics’ Visium FFPE with CytAssist data now available on Illumina® BaseSpace™ Sequence Hub
  • BaseSpace™ Sequence Hub
  • Publications
  • News
  • 06/20/2023

Today, we’re sharing new sequencing run data publicly available on BaseSpace™ Sequence Hub (BSSH) for 10x Genomics Visium FFPE libraries with CytAssis...

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BaseSpace™ Sequence Hub now supports whole genome bisulfite sequencing (WGBS) data with Zymo-Seq Library Kit running on NovaSeq™ X series
  • BaseSpace™ Sequence Hub
  • Publications
  • News
  • 06/06/2023

Today, we’re thrilled to share NovaSeq X series data for whole genome bisulfite sequencing (WGBS) in partnership with Zymo Research. This data is now ...

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MobiDrop MobiCube Single Cell Multiomics Libraries data on the NovaSeq™ 6000 now available on BaseSpace™ Sequence Hub (BSSH)
  • BaseSpace™ Sequence Hub
  • Publications
  • News
  • 05/24/2023

Today, we are excited to share new run data publicly available on Illumina BaseSpace™ Sequence Hub (BSSH) with the MobiDrop single-cell libraries.

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How-To Videos
How to Requeue a Run How to Requeue a Run
Command Line Interface - Getting Started Command Line Interface - Getting Started
Command Line Interface - Uploading Runs Command Line Interface - Uploading Runs
Command Line Interface - Uploading and downloading FASTQ files Command Line Interface - Uploading and downloading FASTQ files