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BaseSpace™ Sequence Hub

Cloud-based data management and simplified bioinformatics for labs that are getting started and rapidly scaling next-generation sequencing.

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Developer Resources
Application Support - Infectious Disease & Microbiology
News and Updates
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New England Biolabs NEBNext Immune Sequencing Kit data now available on the new NextSeq™ 2000 600 cycles kit
  • BaseSpace™ Sequence Hub
  • Product updates
  • News
  • 01/17/2023

In this blogpost, we are showcasing NextSeq 2000 data with the NEBNext Immune Sequencing Kits, using the newly launched 600 cycles sequencing kits.

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HIVE single cell RNAseq libraries data from Honeycomb Biotechnologies are now available on Illumina BaseSpace™ Sequence Hub demo data page!
  • BaseSpace™ Sequence Hub
  • Publications
  • News
  • 01/06/2023

In this blog, we are presenting NextSeqTM 2000 sequencing run data for HIVE scRNAseq libraries from Honeycomb Biotechnologies.

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Zymo Quick-16S Plus NGS Library Prep Kit (V3-V4) sequencing runs and data now available on Illumina BaseSpace™ Sequence Hub
  • BaseSpace™ Sequence Hub
  • Publications
  • News
  • 12/02/2022

This blogpost presents Zymo Quick-16S Plus sequencing data on the newly launched NextSeq2000, 600 cycles kit.

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How-To Videos
How to Requeue a Run How to Requeue a Run
Command Line Interface - Getting Started Command Line Interface - Getting Started
Command Line Interface - Uploading Runs Command Line Interface - Uploading Runs
Command Line Interface - Uploading and downloading FASTQ files Command Line Interface - Uploading and downloading FASTQ files